Chemically Accurate Contact Response Analysis for revealing protein allosteric energy centers and communication pathways.

Map protein structural landscapes using 3Di structural alphabet and direct coupling analysis.

Colab-based notebooks for generating conformational ensembles from protein sequences.

AWSEM coarse-grained protein folding forcefield implemented in OpenMM.

Simulation code and analysis for microtubule growth dynamics at condensate interfaces.

PDMP simulations for stochastic and dynamical modeling of stem cell fate decisions.

Simulation framework for studying rigidity transitions in biomolecular networks.